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nf-core/tools API documentation
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Automated documentation for nf-core/tools (1.13.2)

API Reference

Tests:

  • nf_core.bump_version
    • bump_nextflow_version()
    • bump_pipeline_version()
    • update_file_version()
  • nf_core.create
    • PipelineCreate
  • nf_core.download
    • DownloadProgress
    • DownloadWorkflow
  • nf_core.launch
    • Launch
  • nf_core.licences
    • WorkflowLicences
  • nf_core.lint
    • run_linting()
    • PipelineLint
  • nf_core.list
    • LocalWorkflow
    • RemoteWorkflow
    • Workflows
    • get_local_wf()
    • list_workflows()
    • pretty_date()
  • nf_core.modules
  • nf_core.schema
    • PipelineSchema
  • nf_core.sync
    • PipelineSync
    • PullRequestException
    • SyncException
  • nf_core.utils
    • Pipeline
    • anaconda_package()
    • check_if_outdated()
    • custom_yaml_dumper()
    • fetch_wf_config()
    • get_biocontainer_tag()
    • github_api_auto_auth()
    • nextflow_cmd()
    • parse_anaconda_licence()
    • pip_package()
    • poll_nfcore_web_api()
    • rich_force_colors()
    • setup_requests_cachedir()
    • wait_cli_function()
  • dev
  • 3.0.2
  • 3.0.1
  • 3.0.0
  • 2.14.1
  • 2.14.0
  • 2.13.1
  • 2.13
  • 2.12.1
  • 2.12
  • 2.11.1
  • 2.11
  • 2.10
  • 2.9
  • 2.8
  • 2.7.2
  • 2.7.1
  • 2.7
  • 2.6
  • 2.5.1
  • 2.5
  • 2.4.1
  • 2.4
  • 2.3.2
  • 2.3.1
  • 2.3
  • 2.2
  • 2.1
  • 2.0.1
  • 2.0
  • 1.14
  • 1.13.3
  • 1.13.2
  • 1.13.1
  • 1.13
  • 1.12.1
  • 1.12
  • 1.11
  • 1.10.2
  • 1.10.1
  • 1.10
  • 1.9
  • 1.8
  • 1.7
  • 1.6
  • 1.5
  • Lint tests
    • actions_awsfulltest
    • actions_awstest
    • actions_ci
    • actions_schema_validation
    • conda_dockerfile
    • conda_env_yaml
    • files_exist
    • files_unchanged
    • merge_markers
    • nextflow_config
    • pipeline_name_conventions
    • pipeline_todos
    • readme
    • schema_lint
    • schema_params
    • template_strings
    • version_consistency
  • API
    • bump_version
    • create
    • download
    • launch
    • licences
    • lint
    • list
    • modules
    • schema
    • sync
    • utils
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